Name of Student

Supervisor(s)

Thesis / Dissertation Title

Date/Year of Viva-Voce

Year of Admission- 2019

    Arnab Bhattacharjee

Understanding the Transport of Proteins on DNA Track using in  silico Modeling

Monika Phougat

Narinder Singh Sahni

Application of Multiway Methods in Biomolecular Dynamic Simulation Analysis

Amit Das

Binod Kumar Kanaujia

Modeling, Simulation and Characterization of Gate All Around-
Field Effect Transistors for Biosensing and Analog Applications

Deepti Sharma

Binod Kumar Kanaujia

Design and Implementation of Compact Planar Antennas for Implantable Biomedical Applications

29/08/2023

Madhuri

Gajendra Pratap Singh

Modeling of Molecular Mechanism in Drug Resistant Tuberculosis using Petri Nets

6/9/2023

Sarita

Binod Kumar Kanaujia

Design & Analysis of Differential Antennas for Biomedical Applications

8/11/2023

Vivek Kumar

Sapna Ratan Shah

Mathematical modelling of heat transfer phenomenon in biomechanics

22/12/2022

Year of Admission- 2018

Data Science Approaches to Environmental Systems and  Climate Change

Trishala das

Andrew M. Lynn

Harbinder kaur

Andrew M. Lynn

Molecular Function Prediction and Ecosystem Remediation:  A Network-Centric Approach

Sujeet Kumar Mishra

Arnab Bhattacharjee

Anuja Jain

Shandar Ahmad

Gene Expression meta-analysis, lead generation and cellular specificity prediction for Toll like receptors

Investigation of Distribution functions of Plasma inside Paul
Trap: Modelling and non-linear characterization aspects

Ajeet Kumar Yadav

Pradipta Bandyopadhyay

Understanding the details of hydration of polar and non-polar solutes: Theory and computer simulation

Jyoti Verma

Naidu Subbarao

Designing novel potential inhibitors against envelope proteins of hepatitis C, chikungunya and NIPAH viruses.

22/09/2022

Athokpam Langlen Chanu

R.K. Brojen Singh

Stochastic Formalism in Complex Systems: Big Data Analytics

14/10/2022

Sujit Kumar Singh

Gajendra Pratap Singh

Characterization of Reachability in Petri nets and its Applications.

16/01/2023

Rohit Kumar

Sapna Ratan Shah

Mathematical models of multiclonal dynamics of acute myeloid leukemia: Analysis, simulation and comparison to patient’s data

4/4/2024

Anuj Kumar Dwivedi

Mukesh Jain

Integrated Omics for Discovery of Candidate Genes and Regulatory Elements Involved in Drought Stress Response and Biofortification in Rice

28/02/2023

Mohd. Waseem

Naidu Subbarao

Designing novel inhibitors against drug targets of Candida Glabrata.

14/11/2023

Ram Nayan Verma

Gajendra Pratap Singh and Naidu Subbarao

Identification of Potential Drug Targets using Computational Approaches, Development of Drug Target Database for Neglected Tropical Diseases and Structure Based Drug Design

6/10/2023

Year of Admission- 2017

Rajesh Prasad

A.Krishnamachari

Comparative computational study of lncRNA and mRNA:  Statistical Characterization and Analysis of Sequence Data

Shruti Gupta

Shandar Ahmad

Data analytics and pattern mining from sparse transcriptomic
Datasets with applications to single-cell and spheroid-based cancer
profiling

Ajay Arya

Shandar Ahmad

Computational modeling of genome-wide protein-DNA interactions using sequence,gene-expression and conformational dynamics

25/04/2023

Vishwas Kukreti

Anirban Chakraborti

Studies of Critical Dynamics in Socio-economic Systems using Complexity Theory.

5/12/2023

Shabab Akbar

Sapna Ratan Shah

Mathematical Modelling of Aqueous Humor Outflow in Human Eye Under Diseased Conditions.

31/03/2023

Vikrant Kaim

Binod Kumar Kanaujia

Design and Analysis of Implantable antennas for Biomedical Applications.

1/7/2022

Anupam Mondal

Arnab Bhattacharjee

Understanding the role of structural and functional dynamics of DNA in protein- DNA recognition using theoretical and computational approaches.

29/04/2022

Jyoti Bhadana

R.K. Brojen Singh

Stochastic Approach to Complex Systems Modeling: Emergence of stochasticity in Data Analysis.

13/05/2022

Hari Singh

Binod Kumar Kanaujia

Investigation on Wearable Antennas for Body Area Network

16/07/2022

Geet Madhukar

Naidu Subbarao

Development of Novel Potential Inhibitors against Drug Targets Involved in HNSCC

19/05/2022

Year of Admission- 2016

Dana Mary Varghese

Shandar Ahmad

Integrative functional and context prediction of moonlighting proteins

26/03/2024

Manisha

Shandar Ahmad

Spatio-temporal dynamics of transcription factor binding sites

31/05/2024

Sunita

A.Krishnamachari

ChIP-seq data based Computational analysis of replication origins and related sites in the genome of Plasmodium falciparum

7/5/2024

Praveen Mishra

Anirban Chakraborti

Studies of Energy and Charge Transfer in Zero-dimensional and Two-dimensional Nanomaterials

XX/12/2023

Niranjan Kumar

Andrew M. Lynn

In Silico Identification of potential Inhibitors against Drug Targets involved in Dormancy and Cell Wall synthesis of Mycobacterium tuberculosis.

22/12/2021

Year of admission- 2015

Madhulika Verma

Andrew M. Lynn

Immuno-Oncogenomics: Correlating Immune response from Cancer Genomics

19/09/2023

Pinki Dey

Arnab Bhattacharjee

Understanding the Role of Macromolecular Crowding on Target Search Dynamics of DNA Binding Proteins

10/2/2020

Manu Kandpal

Rita Sharma

Identification and characterization of genes regulating stem elongation and biomass accumulation in rice.

27/07/2021

Syed Shariq Husain

Anirban Chakraborti

Studies of Complex Dynamics in Socio-economic Systems

26/06/2021

Amit Jangid

R.K. Brojen Singh

Modeling Molecular and Cellular-level Interactions in Biological Systems

21/09/2022

Kushagra Krishnan

Rita Sharma

Identification and characterization of reproductive organ-specific genes and regulatory elements in Sorghum.

26/08/2021

Year of Admission- 2014

Sucheta Chauhan

Shandar Ahmad

Deep Learning in Health Informatics

24/01/2020

Siddhartha Kundu

Rita Sharma

Mechanistic Insights Into The Functions Of Plant Class C GH9 Endoglucanases

4/4/2019

Shakti Nath Singh

R.K. Brojen Singh

Computational Study of Emergent Properties in Stochastic Complex Systems: Role of Delay and Noise

7/7/2020

Ankit Verma

Narinder Singh Sahni

Deep Learning for Automated Image Recognition and Data Extraction

4/5/2019

Kiran Sharma

Anirban Chakraborti

Data Science Approaches to Complex Socio-economic Systems

9/10/2019

Rakesh Srivastava

Pradipta Bandyopadhyay

Theory and Simulation of Macromolecules:Binding, Electrostatics and Thermodynamics

3/3/2022

Ruhar

Andrew M. Lynn

Application of Molecular Dynamics to Study pH Dependent Protein Unfolding and Large Biomolecular Systems

20/12/2021

Saurabh Kumar Sharma

R.K. Brojen Singh

Characterization and prediction of complex brain states and their switching mechanism using EEG data

18/04/2019

Year of Admission- 2013

Ajay Kumar Verma

Shandar Ahmad

Deep-learning based meta analysis of gene expression data.

19/07/2022

Dineshchandra Haobijam

R.K. Brojen Singh

Niraj Kumar Khemka

Mukesh Jain

Understanding regulatory network of non-coding RNAs in chickpea

10/12/2020

Pawan Kumar

Indira Ghosh

Design and Validation of Novel Antimalarials Using In silico Methods

27/03/2019

Saurav Mandal

R.K. Brojen Singh

Complex Patterns and Self-Organization in NGS Genomic Data

18/02/2021

Shailesh Kumar Pandey

Indira Ghosh

Study of Ligands-Receptors Interactions to Estimate Components of Binding Free Energy

31/01/2019

Year of Admission- 2012

Amarjeet Kumar

Naidu Subbarao

Identification of Plasmodium falciparum Drug Targets and Designing Antimalarials

22/01/2019

Atul Kumar Jaiswal

A.Krishnamachari

A Computational Study of Physicochemical Features of Nucleic Acids and DNA-Solvent Interactions

2/4/2019

Avijit Rakshit

Pradipta Bandyopadhyay

Development of Algorithms for Energy Landscape Exploration of Fluxional Molecules with Application to Molecular Clusters

5/3/2019

Gourab Das

Indira Ghosh

Influence of Repetitive Sequences in DNA on Biological Systems Under Stress

1/8/2018

Jasleen Gund

R.K. Brojen Singh

Origin and Prediction of Irregularities in Complex Brain Dynamics

9/4/2019

Melissa Reneaux

A.Krishnamachari

Computational Modeling of Working Memory in Prefrontal Cortex: Role of Dopamine and Interneuronal Gap-Junctions

3/5/2019

Rahul Gupta

R.K. Brojen Singh

Computational Modeling of Glutamate Diffusion and AMPA Receptor Crowding at Central Excitatory Synapses

8/5/2019

Year of Admission- 2011

Abdul Qayum

Andrew M. Lynn

GIS Based Traditional Knowledge Mapping of Natural Resources Towards Identifying Malarial Hotspot and Antimalarials

2015

Bharti Deepak Ramkumar

Andrew M. Lynn

Application of Inductive Learning in QSAR and Genome Wide Association Studies

29/06/2018

Kushal Veer Singh

A.Krishnamachari

Machine Learning Approaches for Analysis and Prediction in Biological Networks.

5/5/2018

Preeti Pandey

Andrew M. Lynn

M. tuberculosis α-Isopropylmalate Synthase: Target Prioritization from Metabolic Pathway Analysis, Molecular Dynamics Simulation and Inhibitor Prediction

18/04/2018

Rashmi Kumari

Andrew M. Lynn

Application of Computational Methods in Rational Design of Thermostability and Biomolecular Interactions

19/08/2016

Sabeeha Hasnain

Pradipta Bandyopadhyay

Macromolecular properties in aqueous and cellular environments : Crowding, Diffusion and Hydrodynamics

19/09/2016

Year of Admission- 2010

Neha Aggrawal

Devapriya Choudhary

A Finite Population Analysis of the Effects of Code-Sequence Co-evolution and Horizontal Gene Transfer on the Emergence of an Optimal and Universal Genetic Code

16/05/2018

Rama Kaalia

Indira Ghosh

Analyzing Disease-Target-Drug Relationships

27/05/2016

Tanmoyroy Chowdhury

Alok Bhattacharya

Comparative genomics approaches for Next-genereation sequencing data

2016

Year of Admission- 2009

Reema Singh

Andrew M. Lynn

Development and Apllication of Data Management and Analysis Protocols for High Throughput Data Analysis

30/12/2014

Amit Kumar

Indira Ghosh

In Silico Profiling of Enzymes Active Site for Selectivity: and Specificity : Case Study of Plasmodium falciparum

11/12/2014

Vinekar Rithvik Shamrao

Indira Ghosh

Molecular Dynamics Study of Functional Oligomers

20/06/2014

Lokesh Nigam

A.Krishnamachari

Computational and Experimental Study of p53 Related Pathway

9/6/2020

Sarbashis Das

Alok Bhattacharya

Next-generation Sequencing data analysis and Comparative genomics

19/07/2013

Md. Rehan

Andrew M. Lynn

Information Theoretic methods for Identification of Functional Residues in Proteins

15/06/2012

Ashutosh Vishwa Bandhu

Supratim Sengupta

Origin and Evolution of the Genetic Code: An In Silico Study

13/02/2015

Anmol Jaywant Hemrom

Andrew M. Lynn

Cyber-Infrastructure for the Biological Sciences

8/1/2016

D.Raja Sudhakar

Naidu Subbarao

Computational Study of Growth Factor Receptors (EGFR) by Molecular Modeling and Design of Novel Inhibitors

22/01/2016

Sudhanshu Shankar

Pradipta Bandyopadhyay

Development and application of computational algorithms to understand structures and functions of biomolecules

18/04/2016

Swati Sinha

Andrew M. Lynn

Metabolome mapping using homolgy and non homology based methods

11/12/2015

Taushif Khan

Indira Ghosh

Understanding variation in protein topology using structure and simulation

22/01/2016

Year of Admission- 2008

Smriti Sharma

Pradipta Bandyopadhyay

Elucidating complex interplay of residues for understanding proteins function: A Computational Investigation.

17/07/2021

Om Prakash

Indira Ghosh

Maximum Common Substructure Based Lead and Target Identification

19/05/2014

Vinod Kumar Singh

A.Krishnamachari

Identifying and characterizing DNA sequence features using content and context based computational analysis: a case study of DNA replication site sequences

8/5/2017

Year of Admission- 2006

Candida Vaz

Alok Bhattacharya

Identification and discovery of microRNAs, and deciphering their role in gene regulatory networks

2011

Alok K Srivastava

Narinder Singh Sahni

Gene Ontology based prediction and analysis of microarray

2012

Vikram Singh

Ram Ramaswamy

Synchronization in Sub-cellular Prodcesses

2012

Year of Admission- 2005

Hemant Kushwaha

Ram Ramaswamy

A Computational Analysis of the Singnaling machinery Operative Under Osmotic Stress in Plants

2011

Anupama Singh

Anirban Chakraborti

Study of Abiotic Stress Signaling Network in Rice : A Computational Approach using Gene Expression Data

21/11/2017

Payal Singh

Pradipta Bandyopadhyay

Sequence and Structure Based Computational Study of Regulatory RNA

10/12/2014

C Rupesh Kumar

Ram Ramaswamy

Collective Dynamics and Emergent Properties of Neuronal Systems

27/11/2015

Year of Admission- 2004

Soumyadeep Nandi

Andrew M. Lynn

Data Analysis Pipelines in Computational Biology Using a Three Tier Architecture

2010

Year of Admission- 2003

Vivek

Ram Ramaswamy

Segmentation analysis of Genomes: Statistical features and Application in Molecular Evolution

2008

Desai Dhwani Kiran

Andrew M. Lynn

Computational methods applied to drug target identification and inhibitor design

2009

Y.M Ragothaman

Naidu Subbarao

Computational studies and structures based Rational Drug Design of Flaviviral Envelope Proteins

2008

Year of Admission- 2002

Rajeev Mishra

Andrew M. Lynn

Structural Bioinformatics Study of GTPases Lacking the Catalytic Glutamine

22/11/2014

Vivek Mahale

Ram Ramaswamy

Gene Identification in prokaryotic genomes: Study of codng measures

2008

Oumboon Singussawin

Andrew M. Lynn

A study on using Educational Technology ICT for teaching and learning in basic Education in accordance with Basic Education Curriculum Reform in Thailand

2010

Kamal Rawal

Ram Ramaswamy

Computational Approaches in the Identification and characterization of complex biological signals : Applications to Mobile Genetic Elements.

2008

Sonika Tyagi

Alok Bhattacharya

Computational Study of Gene Regulation at Transcription and Post Transcription Level

2007

Anchal Vishnoi

Alok Bhattacharya

Comparative analysis and evolutionary relationships among genomes

2008